The usermanager used up to and including the current Weatherwax release the cleanID for selecting users that should be modified or deleted. (Not for creating users)
See
https://github.com/splitbrain/dokuwiki/pull/348
So there were already troubles in the user manager when people uses usernames which differ from Dokuwiki's pageid convention.
But yes, i think it can gives similar compatibility issues in the usermanager. I guess in other areas it's fine...